PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000139602
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 145aa    MW: 16611.6 Da    PI: 6.2368
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000139602genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.0005380102323
                    ET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   3 Cp..dCgksFsrksnLkrHirtH 23 
                    C+   Cgk F +   L++H   H
  MDP0000139602  80 CShdSCGKIFIDAGALRKHADIH 102
                    77779**************9877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.4E-1073103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.28E-673119No hitNo description
PROSITE profilePS5015710.9778107IPR007087Zinc finger, C2H2
PROSITE patternPS00028080102IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5104119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MESQFHHNSS EXRPTFRPKT LPVKWFKEWV PQDVIATGGE CSLMKWVKDT SEALDEKSKK  60
TMALEPELEP EPTTEVLFLC SHDSCGKIFI DAGALRKHAD IHAERQHVCW FEGCGKVFFP  120
DRVSYGIEIA SYYKVKRNGE ELSVS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008339532.11e-105PREDICTED: uncharacterized zinc finger protein At4g06634-like
SwissprotQ2V3L31e-33Y4634_ARATH; Uncharacterized zinc finger protein At4g06634
TrEMBLM5XF125e-46M5XF12_PRUPE; Uncharacterized protein
STRINGPGSC0003DMT4000234591e-42(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.12e-32C2H2 family protein